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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
56
ChIP-seq
3
Hi-C
2
ATAC-seq
Assay category
207
DNA accessibility
56
DNA binding
3
3D chromatin structure
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
8
October, 2019
4
October, 2017
3
October, 2022
1
March, 2019
1
November, 2020
Available data
2527
bam
2387
bigWig
1386
bed narrowPeak
1292
tsv
931
fastq
687
bigBed narrowPeak
328
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
260
Homo sapiens
Biosample type
213
tissue
cell line
52
primary cell
1
in vitro differentiated cells
Organ
78
kidney
47
brain
46
musculature of body
36
limb
30
heart
25
epithelium
23
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
263
AMP
3
HPAP
Genome assembly (visualization)
242
hg19
237
GRCh38
Lab
261
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
month_released!
May, 2020
organ_slims!
small intestine
BIOSAMPLE
ASSAY
266 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 21 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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