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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
DNase-seq
50
ChIP-seq
2
ATAC-seq
Assay category
191
DNA accessibility
50
DNA binding
Target of assay
47
histone
47
histone modification
26
broad histone mark
21
narrow histone mark
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
173
June, 2019
41
August, 2017
9
November, 2018
8
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
1
November, 2020
Available data
2261
bam
2136
bigWig
1250
bed narrowPeak
1171
tsv
674
fastq
612
bigBed narrowPeak
321
tagAlign
249
bed bed3+
241
bed broadPeak
204
bigBed broadPeak
160
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
11
bed bed3
8
csv
7
bed bedgraph
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
235
Homo sapiens
Biosample type
213
tissue
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
47
brain
46
musculature of body
36
limb
30
heart
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
241
AMP
Genome assembly (visualization)
223
hg19
217
GRCh38
Lab
239
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
month_released!
May, 2020
organ_slims!
epithelium
small intestine
BIOSAMPLE
ASSAY
241 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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