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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
39
ChIP-seq
Assay category
199
DNA accessibility
39
DNA binding
Target of assay
39
histone
39
histone modification
20
broad histone mark
19
narrow histone mark
5
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
183
June, 2019
27
August, 2017
9
November, 2017
8
October, 2019
7
November, 2018
3
October, 2017
1
November, 2020
Available data
2066
bam
1958
bigWig
1115
bed narrowPeak
1098
tsv
536
bigBed narrowPeak
360
fastq
356
tagAlign
238
bed broadPeak
231
bed bed3+
215
bigBed broadPeak
154
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
15
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
238
Homo sapiens
Biosample type
193
tissue
44
primary cell
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
44
brain
36
limb
30
heart
20
epithelium
pancreas
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
238
AMP
Genome assembly (visualization)
220
GRCh38
217
hg19
Lab
238
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
cell line
organ_slims!
pancreas
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
238 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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