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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 56ChIP-seq
  • 2ATAC-seq
Assay category
  • 207DNA accessibility
  • 56DNA binding
Target of assay
  • 51histone
  • 51histone modification
  • 28broad histone mark
  • 23narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 187June, 2019
  • 41August, 2017
  • 12November, 2017
  • 9November, 2018
  • 8October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 257Homo sapiens
Biosample type
  • 213tissue
  • cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 20pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 5liver
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 263AMP
Genome assembly (visualization)
  • 239hg19
  • 237GRCh38
Lab
  • 261AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 2inconsistent assembly
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

263 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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