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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 933ChIP-seq
  • 268ATAC-seq
  • 207DNase-seq
  • 5FAIRE-seq
Assay category
  • 933DNA binding
  • 480DNA accessibility
Target of assay
  • 816histone modification
  • 815histone
  • 411narrow histone mark
  • 403broad histone mark
  • 117transcription factor
  • 42RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 210June, 2019
  • 174October, 2019
  • 142August, 2017
  • 132May, 2021
  • 97May, 2019
  • 92August, 2021
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 64November, 2017
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 27May, 2020
  • 25November, 2019
  • 17November, 2018
  • 16February, 2018
  • 12October, 2017
  • 9February, 2021
  • 7July, 2019
  • 6January, 2019
  • 5September, 2017
  • 3December, 2018
  • 2March, 2020
  • 2November, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1407Homo sapiens
Biosample type
  • 984tissue
  • cell line
  • 295primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 203brain
  • 193pancreas
  • 179heart
  • 175kidney
  • 136epithelium
  • 133liver
  • 121vasculature
  • 117blood vessel
  • 92limb
  • 75connective tissue
  • 62artery
  • 60musculature of body
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1327AMP
  • 86T1D
Genome assembly (visualization)
  • 1274GRCh38
  • 1198hg19
Lab
  • 1153AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 42inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 36missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1413 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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