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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
2
pCHi-C
Assay category
14
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
1
August, 2021
1
November, 2019
Available data
2544
bam
2396
bigWig
1360
tsv
1277
bed narrowPeak
fastq
612
bigBed narrowPeak
371
tagAlign
249
bed bed3+
241
bed broadPeak
204
bigBed broadPeak
160
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
11
bed bed3
8
csv
7
bed bedgraph
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
10
tissue
6
in vitro differentiated cells
cell line
Organ
6
pancreas
epithelium
3
heart
2
blood vessel
2
musculature of body
2
vasculature
1
liver
1
vein
Project
16
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
biosample_type!
cell line
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
See all biosamples
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