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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18Hi-C
  • 3pCHi-C
Assay category
  • 183D chromatin structure
Date released
  • 12March, 2020
  • 3October, 2019
  • 3October, 2022
  • 1August, 2018
  • 1August, 2021
  • 1November, 2019
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 21Homo sapiens
Biosample type
  • 10tissue
  • 7in vitro differentiated cells
  • 4primary cell
  • cell line
Organ
  • 6pancreas
  • 4epithelium
  • 3heart
  • 2blood vessel
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1connective tissue
  • 1liver
  • 1vein
Project
  • 18AMP
  • 3HPAP
Genome assembly (visualization)
  • 19hg19
Lab
  • 17AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
  • 3audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

21 results

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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
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