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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
4
ChIP-seq
Assay category
205
DNA accessibility
4
DNA binding
Target of assay
2
RNA binding protein
2
broad histone mark
2
histone
2
histone modification
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
9
November, 2018
8
October, 2019
November, 2017
4
August, 2017
1
November, 2020
Available data
2732
bam
2581
bigWig
1481
tsv
1349
bed narrowPeak
922
fastq
624
bigBed narrowPeak
tagAlign
270
bed bed3+
251
bed broadPeak
220
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
tar
Organism
209
Homo sapiens
Biosample type
176
tissue
32
primary cell
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
209
AMP
Genome assembly (visualization)
205
GRCh38
186
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
files.file_type!
tagAlign
tar
month_released!
November, 2017
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
skeletal muscle myoblast
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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