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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
ChIP-seq
1
FAIRE-seq
Assay category
17
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
14
June, 2019
5
October, 2019
4
November, 2017
Available data
266
bam
257
fastq
251
bigWig
136
bed narrowPeak
121
tsv
80
zippedFastqFolder
75
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
23
Homo sapiens
Biosample type
23
primary cell
Organ
78
kidney
38
brain
36
limb
33
musculature of body
30
heart
23
epithelium
18
ureter
18
vasculature
14
blood vessel
9
connective tissue
6
pancreas
5
liver
5
vein
4
artery
4
eye
2
adipose tissue
2
nerve
1
spleen
Project
23
AMP
Genome assembly (visualization)
20
GRCh38
17
hg19
Lab
23
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
organ_slims!
esophagus
BIOSAMPLE
ASSAY
23 results
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DNase-seq
ChIP-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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