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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
21
ChIP-seq
Assay category
172
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
154
June, 2019
15
August, 2017
9
November, 2018
8
October, 2019
6
November, 2017
1
November, 2020
Available data
2637
bam
2468
bigWig
1396
tsv
1330
bed narrowPeak
890
fastq
638
bigBed narrowPeak
363
tagAlign
232
bed bed3+
217
bed broadPeak
193
bigBed broadPeak
159
txt
153
zippedFastqFolder
64
xls
19
bedpe bed3+
19
hic
11
bed bed3
10
bed bedMethyl
10
bigBed bedMethyl
8
csv
7
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
193
Homo sapiens
Biosample type
144
tissue
cell line
48
primary cell
1
in vitro differentiated cells
Organ
78
kidney
38
brain
36
limb
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
193
AMP
Genome assembly (visualization)
189
GRCh38
170
hg19
Lab
193
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
month_released!
February, 2018
July, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
193 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 35 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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