Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 21ChIP-seq
Assay category
  • 205DNA accessibility
  • 21DNA binding
Target of assay
  • 16histone
  • 16histone modification
  • 8broad histone mark
  • 8narrow histone mark
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 187June, 2019
  • 15August, 2017
  • 9November, 2018
  • 8October, 2019
  • 6November, 2017
  • 1November, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 226Homo sapiens
Biosample type
  • 176tissue
  • cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 6pancreas
  • 5liver
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 226AMP
Genome assembly (visualization)
  • 222GRCh38
  • 203hg19
Lab
  • 226AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 1inconsistent assembly
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

226 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego