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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
10
ChIP-seq
7
DNase-seq
2
FAIRE-seq
Assay category
31
DNA accessibility
10
DNA binding
Target of assay
histone
43
histone modification
27
broad histone mark
16
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
14
September, 2018
10
October, 2018
5
August, 2017
5
September, 2017
4
June, 2019
3
November, 2018
Available data
508
bam
443
bigWig
tsv
371
fastq
84
bed narrowPeak
80
zippedFastqFolder
41
bigBed narrowPeak
15
bed bed3+
8
bed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
4
tagAlign
3
cool
1
bedpe
Organism
41
Homo sapiens
Biosample type
22
primary cell
19
tissue
cell line
Organ
81
kidney
46
epithelium
43
liver
41
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
41
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
41
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
41 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
9
4
pancreas
1
2
1
islet of Langerhans
1
1
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