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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
187
DNase-seq
27
ATAC-seq
3
FAIRE-seq
Assay category
343
DNA binding
217
DNA accessibility
Target of assay
305
histone
305
histone modification
191
broad histone mark
114
narrow histone mark
65
transcription factor
RNA binding protein
4
chromatin remodeller
Date released
199
June, 2019
61
April, 2019
58
November, 2017
56
May, 2019
46
December, 2017
40
August, 2017
34
October, 2018
29
October, 2019
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2631
bam
2487
bigWig
1465
tsv
1238
bed narrowPeak
874
fastq
560
bigBed narrowPeak
378
tagAlign
246
bed bed3+
234
bed broadPeak
197
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
19
bedpe bed3+
18
hic
11
bed bed3
7
bed bedgraph
7
csv
3
cool
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
554
Homo sapiens
Biosample type
465
tissue
cell line
80
primary cell
15
in vitro differentiated cells
Organ
122
brain
101
kidney
88
heart
84
limb
vasculature
75
blood vessel
75
pancreas
68
epithelium
54
liver
47
musculature of body
26
nerve
24
artery
21
connective tissue
18
ureter
13
vein
9
spleen
5
eye
4
adipose tissue
Project
560
AMP
Genome assembly (visualization)
551
GRCh38
486
hg19
Lab
560
AMP-T2D consortium
Audit category:
27
inconsistent control
20
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
month_released!
November, 2018
organ_slims!
vasculature
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
560 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
heart
7
18
+ See 48 more…
primary cell
skeletal muscle myoblast
12
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
pancreatic alpha cell
6
+ See 19 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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