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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 448ChIP-seq
  • 207DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 448DNA binding
  • 239DNA accessibility
Target of assay
  • 371histone
  • 371histone modification
  • 232broad histone mark
  • 139narrow histone mark
  • 77transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 210June, 2019
  • 97May, 2019
  • 64April, 2019
  • 63November, 2017
  • 62October, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 17November, 2018
  • 14September, 2018
  • 6January, 2019
  • 6October, 2017
  • 5September, 2017
  • 3December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 681Homo sapiens
Biosample type
  • 561tissue
  • cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 127brain
  • 103kidney
  • 94heart
  • 84limb
  • 84pancreas
  • 83vasculature
  • 79blood vessel
  • 75epithelium
  • 65liver
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 687AMP
Genome assembly (visualization)
  • 675GRCh38
  • 612hg19
Lab
  • 687AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

687 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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