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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
total RNA-seq
122
ChIP-seq
5
ATAC-seq
Assay category
171
Transcription
122
DNA binding
5
DNA accessibility
Target of assay
115
histone
115
histone modification
64
broad histone mark
51
narrow histone mark
4
transcription factor
3
control
Date released
468
February, 2021
298
May, 2021
260
May, 2020
210
June, 2019
187
October, 2019
114
July, 2018
97
May, 2019
85
July, 2019
65
April, 2019
57
November, 2017
40
May, 2024
25
August, 2021
21
August, 2017
20
May, 2022
19
November, 2019
14
October, 2018
13
March, 2020
5
April, 2018
5
December, 2019
5
November, 2020
3
February, 2023
2
January, 2018
Available data
298
bigWig
272
bam
169
tsv
132
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
298
Homo sapiens
Biosample type
171
primary cell
89
in vitro differentiated cells
38
tissue
cell line
Organ
38
pancreas
4
epithelium
3
heart
2
embryo
1
connective tissue
Project
163
AMP
135
T1D
Genome assembly (visualization)
298
hg19
258
GRCh38
Lab
175
Kyle Gaulton, UCSD
123
AMP-T2D consortium
Audit category:
68
inconsistent ontology term
biosample_type!
cell line
files.file_type!
fastq
BIOSAMPLE
ASSAY
298 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
51
84
CD8-positive, alpha-beta T cell
2
33
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
embryonic stem cell
5
pancreatic PP cell
2
cardiac fibroblast
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
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