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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
24
Transcription
3
3D chromatin structure
3
DNA binding
2
DNA accessibility
Target of assay
6
control
Date released
15
July, 2019
12
February, 2020
3
November, 2017
2
March, 2020
1
October, 2017
1
October, 2019
Available data
243
bam
222
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
34
Homo sapiens
Biosample type
25
tissue
9
primary cell
Organ
502
connective tissue
420
pancreas
417
adipose tissue
160
liver
137
epithelium
122
heart
58
bone element
34
brain
23
vasculature
22
blood vessel
18
kidney
11
musculature of body
8
limb
7
embryo
6
artery
5
eye
5
nerve
3
spleen
2
intestine
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
34 results
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total RNA-seq
small RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
ATAC-seq
pCHi-C
tissue
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
diencephalon
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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