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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1174total RNA-seq
  • 979ChIP-seq
  • 207DNase-seq
  • 133ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Hi-C
Assay category
  • 1298Transcription
  • 979DNA binding
  • 345DNA accessibility
  • 16DNA methylation
  • 43D chromatin structure
Target of assay
  • 832histone modification
  • 831histone
  • 421narrow histone mark
  • 409broad histone mark
  • 140transcription factor
  • 43RNA binding protein
  • 10control
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 468February, 2021
  • 298May, 2021
  • 272August, 2017
  • 260May, 2020
  • 210June, 2019
  • 187October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72December, 2017
  • 72September, 2018
  • 66November, 2017
  • 65April, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 25August, 2021
  • 23November, 2018
  • 20May, 2022
  • 19November, 2019
  • 14October, 2017
  • 13March, 2020
  • 7August, 2020
  • 7January, 2018
  • 6January, 2019
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3December, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2641Homo sapiens
Biosample type
  • 1772tissue
  • 613primary cell
  • cell line
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 570connective tissue
  • 567pancreas
  • 425adipose tissue
  • 290liver
  • 251epithelium
  • 222brain
  • 168heart
  • 119kidney
  • 99vasculature
  • 94blood vessel
  • 91limb
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 29artery
  • 21embryo
  • 18ureter
  • 16spleen
  • 15vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2455AMP
  • 182T1D
  • 10HPAP
Genome assembly (visualization)
  • 2499hg19
  • 2476GRCh38
  • 5hg18
Lab
  • 2351AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

2647 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue381122
islet of Langerhans260291361
liver147822201
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes593
adipocyte44713
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
stem cell
hESC21
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