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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
64
ATAC-seq
3
Hi-C
Assay category
310
DNA binding
64
DNA accessibility
3
3D chromatin structure
Target of assay
242
histone
242
histone modification
147
narrow histone mark
95
broad histone mark
64
control
4
transcription factor
Date released
90
May, 2021
88
August, 2021
68
August, 2017
50
May, 2020
49
October, 2019
21
November, 2017
8
October, 2017
3
October, 2022
Available data
2810
bam
2647
bigWig
1481
tsv
1413
bed narrowPeak
931
fastq
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
376
Homo sapiens
Biosample type
245
tissue
92
primary cell
40
in vitro differentiated cells
cell line
Organ
74
liver
67
brain
64
kidney
22
connective tissue
16
pancreas
15
musculature of body
10
epithelium
8
adipose tissue
1
pituitary gland
Project
290
AMP
84
T1D
3
HPAP
Genome assembly (visualization)
228
GRCh38
196
hg19
Lab
226
AMP-T2D consortium
84
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
liver
70
kidney
64
skeletal muscle tissue
15
islet of Langerhans
9
brain
8
+ See 44 more…
primary cell
monocyte
84
hepatocyte
4
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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