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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 437ChIP-seq
  • 232total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 16WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1pCHi-C
Assay category
  • 437DNA binding
  • 366Transcription
  • 102DNA accessibility
  • 20DNA methylation
Target of assay
  • 214histone modification
  • 213histone
  • 117transcription factor
  • 110broad histone mark
  • 106control
  • 102narrow histone mark
  • 26RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 287August, 2017
  • 94December, 2017
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 39February, 2018
  • 27November, 2018
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 9November, 2017
  • 7August, 2020
  • 7December, 2018
  • 7January, 2019
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 924Homo sapiens
Biosample type
  • cell line
  • 409primary cell
  • 377tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 257epithelium
  • 101connective tissue
  • 98liver
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 762AMP
  • 169HPAP
Genome assembly (visualization)
  • 641hg19
  • 630GRCh38
  • 5hg18
Lab
  • 736AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

931 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
spleen20121
pancreas1621
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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