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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21Hi-C
Assay category
  • 213D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 3October, 2022
  • 1August, 2021
  • 1March, 2019
  • 1March, 2023
  • 1November, 2019
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 21Homo sapiens
Biosample type
  • 11tissue
  • 6primary cell
  • 4in vitro differentiated cells
  • cell line
Organ
  • 6pancreas
  • 5epithelium
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2musculature of body
  • 2vein
  • 1kidney
  • 1liver
Project
  • 17AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 20hg19
  • 1GRCh38
Lab
  • 15AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 4inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

21 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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