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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
ChIP-seq
Assay category
344
DNA binding
Target of assay
283
histone
283
histone modification
159
narrow histone mark
124
broad histone mark
61
control
transcription factor
Date released
86
May, 2021
66
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
21
August, 2021
6
October, 2017
Available data
2674
bam
2507
bigWig
1481
tsv
1296
bed narrowPeak
fastq
610
bigBed narrowPeak
374
tagAlign
258
bed broadPeak
bed bed3+
221
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
344
Homo sapiens
Biosample type
223
tissue
85
primary cell
36
in vitro differentiated cells
cell line
Organ
110
brain
71
liver
22
connective tissue
15
musculature of body
11
pancreas
8
adipose tissue
3
epithelium
1
pituitary gland
Project
260
AMP
84
T1D
Genome assembly (visualization)
202
GRCh38
190
hg19
Lab
260
AMP-T2D consortium
84
Kyle Gaulton, UCSD
biosample_type!
cell line
files.file_type!
bed bed3+
fastq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
344 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
hepatocyte
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
pancreatic PP cell
2
See all biosamples
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