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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
Assay category
68
DNA binding
Target of assay
310
histone
histone modification
169
narrow histone mark
141
broad histone mark
64
control
4
transcription factor
Date released
23
May, 2020
11
August, 2017
10
November, 2017
9
October, 2019
8
August, 2021
5
May, 2021
2
October, 2017
Available data
2060
bam
1815
bigWig
1480
tsv
717
fastq
597
bed narrowPeak
316
bigBed narrowPeak
245
bed bed3+
212
bed broadPeak
210
bigBed broadPeak
160
txt
153
zippedFastqFolder
68
tagAlign
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
67
Homo sapiens
Biosample type
52
tissue
14
in vitro differentiated cells
cell line
2
primary cell
Organ
27
liver
19
brain
4
pancreas
3
connective tissue
3
epithelium
2
musculature of body
1
adipose tissue
Project
68
AMP
Genome assembly (visualization)
5
hg19
4
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bedpe bed3+
organ_slims!
ovary
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
tissue
liver
26
brain
2
caudate nucleus
2
cingulate gyrus
2
layer of hippocampus
2
+ See 15 more…
in vitro differentiated cells
neural progenitor cell
7
cardiomyocytes
3
adipocyte
2
pancreatic PP cell
2
primary cell
hepatocyte
1
skeletal muscle myoblast
1
See all biosamples
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