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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
61
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
1
October, 2019
Available data
2769
bam
2622
bigWig
tsv
1321
bed narrowPeak
931
fastq
687
bigBed narrowPeak
354
tagAlign
265
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
153
zippedFastqFolder
103
txt
35
bed bedMethyl
35
bigBed bedMethyl
20
bedpe bed3+
20
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
154
Homo sapiens
Biosample type
154
primary cell
cell line
Organ
81
epithelium
80
pancreas
1
blood vessel
1
vasculature
1
vein
Project
153
HPAP
1
AMP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
1
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
tsv
month_released!
August, 2021
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
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