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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1202total RNA-seq
  • 211single cell RNA-seq
  • 26pCHi-C
  • 18small RNA-seq
  • 13ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
  • 1snATAC-seq
Assay category
  • 1431Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 481February, 2021
  • 188May, 2020
  • 169May, 2021
  • 164July, 2018
  • 106August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 36March, 2020
  • 26September, 2018
  • 25February, 2020
  • 19November, 2019
  • 16February, 2023
  • 15February, 2018
  • 12October, 2019
  • 9December, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1July, 2025
Available data
  • 2810bam
  • 2647bigWig
  • 1482tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 271bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
Organism
  • 1481Homo sapiens
Biosample type
  • 1077tissue
  • 270primary cell
  • 131in vitro differentiated cells
  • cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 401adipose tissue
  • 383pancreas
  • 159liver
  • 121epithelium
  • 116heart
  • 58bone element
  • 26brain
  • 18kidney
  • 16blood vessel
  • 16vasculature
  • 10musculature of body
  • 7limb
  • 6artery
  • 6embryo
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1380AMP
  • 96T1D
  • 6HPAP
Genome assembly (visualization)
  • 1297GRCh38
  • 1297hg19
Lab
  • 1378AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 111inconsistent ontology term
  • 9audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1482 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
snATAC-seq
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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