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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
7
May, 2022
Available data
2368
bam
2222
bigWig
1336
bed narrowPeak
1080
tsv
887
fastq
677
bigBed narrowPeak
370
tagAlign
264
bed bed3+
260
bed broadPeak
224
bigBed broadPeak
153
zippedFastqFolder
103
txt
33
bed bedMethyl
33
bigBed bedMethyl
20
bedpe bed3+
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
103
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
103
AMP
Genome assembly (visualization)
4
hg19
Lab
94
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
biosample_type!
cell line
files.file_type!
hic
lab.title!
Katalin Susztak, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
103 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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