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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
68
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
February, 2023
7
May, 2022
Available data
2807
bam
2641
bigWig
1462
tsv
1348
bed narrowPeak
851
fastq
687
bigBed narrowPeak
378
tagAlign
266
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
153
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
4
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bed bed3
1
bedpe
1
tagAlign bed3+
tar
Organism
153
Homo sapiens
Biosample type
153
tissue
cell line
Organ
84
bone element
62
kidney
6
pancreas
1
musculature of body
Project
153
AMP
Genome assembly (visualization)
1
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
cell line
files.file_type!
tar
month_released!
August, 2018
February, 2023
BIOSAMPLE
ASSAY
153 results
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RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
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