Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 54ChIP-seq
  • 1DNase-seq
Assay category
  • 54DNA binding
  • 1DNA accessibility
Target of assay
  • 35histone
  • 35histone modification
  • 19narrow histone mark
  • 16broad histone mark
  • 11transcription factor
  • 8RNA binding protein
  • 8control
  • 1chromatin remodeller
Date released
  • 44August, 2017
  • 7November, 2017
  • 2October, 2018
  • 2September, 2017
Available data
  • 55bam
  • 55fastq
  • 50bigWig
  • 47bed narrowPeak
  • 12bed bed3+
  • 8bigBed narrowPeak
  • 6bed broadPeak
  • 5bigBed broadPeak
  • 1tagAlign
Organism
  • 54Homo sapiens
Biosample type
  • cell line
  • 31in vitro differentiated cells
  • 16tissue
  • 8primary cell
Organ
  • 31connective tissue
  • 14pancreas
  • 7brain
  • 4epithelium
  • 4vasculature
  • 2blood vessel
  • 2liver
Project
  • 55AMP
Genome assembly (visualization)
  • 53hg19
  • 50GRCh38
Lab
  • 55AMP-T2D consortium
Audit category:
  • 1missing controlled_by
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

55 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
in vitro differentiated cells
adipocyte31
tissue
islet of Langerhans101
pancreas3
liver2
primary cell
astrocyte of the cerebellum3
brain microvascular endothelial cell2
choroid plexus epithelial cell2
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego