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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 66ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 66DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 40histone
  • 40histone modification
  • 23control
  • 20broad histone mark
  • 20narrow histone mark
  • 3transcription factor
  • 2RNA binding protein
Date released
  • 43August, 2017
  • 33February, 2018
  • 3December, 2017
  • 1October, 2017
Available data
  • 80fastq
  • 76bam
  • 54bigWig
  • 41bed narrowPeak
  • 11bigBed narrowPeak
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 9tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 80Homo sapiens
Biosample type
  • cell line
  • 37primary cell
  • 33in vitro differentiated cells
  • 10tissue
Organ
  • 29pancreas
  • 26epithelium
  • 12embryo
  • 4liver
  • 2musculature of body
  • 1brain
Project
  • 80AMP
Genome assembly (visualization)
  • 58hg19
  • 52GRCh38
Lab
  • 80AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

80 results

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ChIP-seq
total RNA-seq
RRBS
DNase-seq
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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