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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 155ChIP-seq
  • 131total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
Assay category
  • 158Transcription
  • 155DNA binding
  • 22DNA accessibility
Target of assay
  • 68histone
  • 68histone modification
  • 55transcription factor
  • 37broad histone mark
  • 32control
  • 31narrow histone mark
  • 3RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 150August, 2017
  • 72September, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12November, 2018
  • 8October, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 335fastq
  • 334bam
  • 303bigWig
  • 158tsv
  • 114bed narrowPeak
  • 75bigBed narrowPeak
  • 14bed bed3+
  • 11bed broadPeak
  • 10tagAlign
  • 4bigBed broadPeak
Organism
  • 329Homo sapiens
Biosample type
  • cell line
  • 203tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 219pancreas
  • 78epithelium
  • 51liver
  • 32connective tissue
  • 27adipose tissue
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 335AMP
Genome assembly (visualization)
  • 304hg19
  • 303GRCh38
Lab
  • 334AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

335 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans6891
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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