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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 88DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 55histone
  • 55histone modification
  • 30broad histone mark
  • 25narrow histone mark
  • 17transcription factor
  • 16control
  • 3RNA binding protein
  • 1chromatin remodeller
Date released
  • 52December, 2017
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 11July, 2018
  • 7January, 2019
  • 5January, 2018
  • 5November, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 139fastq
  • 130bam
  • 117bigWig
  • 68bed narrowPeak
  • 45bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 140Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • cell line
  • 47tissue
  • 37primary cell
  • 4stem cell
Organ
  • 51pancreas
  • 45epithelium
  • 24liver
  • 14embryo
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 139AMP
  • 1HPAP
Genome assembly (visualization)
  • 117GRCh38
  • 112hg19
  • 5hg18
Lab
  • 138AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 13inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

140 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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