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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199total RNA-seq
  • 3ChIP-seq
  • 1DNase-seq
  • 1WGBS
Assay category
  • 199Transcription
  • 3DNA binding
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 3transcription factor
Date released
  • 93August, 2017
  • 76February, 2023
  • 26September, 2018
  • 6February, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 204fastq
  • 128bam
  • 128bigWig
  • 123tsv
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bed narrowPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
  • 1bigBed narrowPeak
Organism
  • 204Homo sapiens
Biosample type
  • 105primary cell
  • 93tissue
  • cell line
  • 6in vitro differentiated cells
Organ
  • 155pancreas
  • 65epithelium
  • 3adipose tissue
  • 3connective tissue
  • 1embryo
Project
  • 128AMP
  • 76HPAP
Genome assembly (visualization)
  • 127GRCh38
  • 127hg19
Lab
  • 128AMP-T2D consortium
  • 76Klaus Kaestner, Upenn
Audit category:
  • 3missing controlled_by
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

204 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
primary cell
exocrine cell39
pancreatic alpha cell37
pancreatic beta cell20
pancreatic acinar cell4
pancreatic ductal cell4
tissue
islet of Langerhans89
white adipose tissue3
pancreas1
in vitro differentiated cells
definitive endodermal cell1
embryonic stem cell1
endocrine cell1
pancreatic endoderm1
posterior foregut1
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