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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 136DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 80histone
  • 80histone modification
  • 43control
  • 41broad histone mark
  • 39narrow histone mark
  • 13transcription factor
  • 7RNA binding protein
  • 1chromatin remodeller
Date released
  • 70August, 2017
  • 26December, 2017
  • 22February, 2018
  • 9November, 2017
  • 9November, 2018
  • 9October, 2017
  • 6September, 2017
Available data
  • 151fastq
  • 146bam
  • 106bigWig
  • 101bed narrowPeak
  • 49bigBed narrowPeak
  • 39bed broadPeak
  • 37bed bed3+
  • 30bigBed broadPeak
  • 27tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 144Homo sapiens
Biosample type
  • cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 10liver
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1spleen
Project
  • 151AMP
Genome assembly (visualization)
  • 117hg19
  • 107GRCh38
Lab
  • 151AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 7missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

151 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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