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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 70DNA binding
  • 66DNA accessibility
  • 1Transcription
Target of assay
  • 42transcription factor
  • 15histone
  • 15histone modification
  • 13control
  • 12broad histone mark
  • 3narrow histone mark
  • 2chromatin remodeller
Date released
  • 48December, 2017
  • 39May, 2022
  • 21August, 2017
  • 16February, 2021
  • 5January, 2018
  • 5November, 2018
  • 5September, 2017
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 102fastq
  • 81bam
  • 72bigWig
  • 64bed narrowPeak
  • 48bigBed narrowPeak
  • 40zippedFastqFolder
  • 11bed bed3+
  • 1bed broadPeak
Organism
  • 142Homo sapiens
Biosample type
  • cell line
  • 64primary cell
  • 57tissue
  • 18in vitro differentiated cells
  • 3stem cell
Organ
  • 55pancreas
  • 48epithelium
  • 46liver
  • 6embryo
  • 5connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 86AMP
  • 56HPAP
Genome assembly (visualization)
  • 66GRCh38
  • 66hg19
  • 5hg18
Lab
  • 85AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 17inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

142 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
GRO-seq
FAIRE-seq
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
stem cell
hESC21
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