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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
95
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
64
histone
64
histone modification
37
broad histone mark
27
narrow histone mark
19
control
12
transcription factor
7
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
32
August, 2017
29
October, 2018
21
December, 2017
7
August, 2020
7
January, 2019
6
November, 2018
4
September, 2020
Available data
105
fastq
95
bam
86
bigWig
76
bed narrowPeak
46
bigBed narrowPeak
1
zippedFastqFolder
Organism
106
Homo sapiens
Biosample type
cell line
48
tissue
46
in vitro differentiated cells
12
primary cell
Organ
40
connective tissue
30
pancreas
25
epithelium
21
liver
13
spleen
9
adipose tissue
Project
95
AMP
11
HPAP
Genome assembly (visualization)
86
GRCh38
76
hg19
Lab
95
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
2
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
in vitro differentiated cells
adipocyte
31
hepatocyte
15
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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