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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 95ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 95DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 64histone
  • 64histone modification
  • 37broad histone mark
  • 27narrow histone mark
  • 19control
  • 12transcription factor
  • 7RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1chromatin remodeller
Date released
  • 32August, 2017
  • 29October, 2018
  • 21December, 2017
  • 7August, 2020
  • 7January, 2019
  • 6November, 2018
  • 4September, 2020
Available data
  • 105fastq
  • 95bam
  • 86bigWig
  • 76bed narrowPeak
  • 46bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 106Homo sapiens
Biosample type
  • cell line
  • 48tissue
  • 46in vitro differentiated cells
  • 12primary cell
Organ
  • 40connective tissue
  • 30pancreas
  • 25epithelium
  • 21liver
  • 13spleen
  • 9adipose tissue
Project
  • 95AMP
  • 11HPAP
Genome assembly (visualization)
  • 86GRCh38
  • 76hg19
Lab
  • 95AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

106 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
in vitro differentiated cells
adipocyte31
hepatocyte15
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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