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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 125total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 66ChIP-seq
  • 51WGBS
  • 48snATAC-seq
  • 10DNase-seq
  • 1pCHi-C
Assay category
  • 210Transcription
  • 157DNA accessibility
  • 66DNA binding
  • 51DNA methylation
Target of assay
  • 35control
  • 22transcription factor
  • 10RNA binding protein
  • 9histone modification
  • 8histone
  • 5narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 110August, 2017
  • 45February, 2021
  • 41September, 2018
  • 37October, 2018
  • 25September, 2020
  • 19November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7December, 2018
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 351fastq
  • 270bam
  • 221bigWig
  • 141tsv
  • 135zippedFastqFolder
  • 89bed narrowPeak
  • 56bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 485Homo sapiens
Biosample type
  • 281primary cell
  • 202tissue
  • cell line
  • 2in vitro differentiated cells
Organ
  • 295pancreas
  • 157epithelium
  • 27connective tissue
  • 26adipose tissue
  • 21liver
  • 17spleen
  • 1brain
Project
  • 274AMP
  • 211HPAP
Genome assembly (visualization)
  • 225hg19
  • 220GRCh38
Lab
  • 248AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

485 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas41322
spleen11321
liver132
subcutaneous adipose tissue112
in vitro differentiated cells
adipocyte1
white fat cell1
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