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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 372ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 372DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 206histone
  • 206histone modification
  • 107broad histone mark
  • 98narrow histone mark
  • 95transcription factor
  • 71control
  • 16RNA binding protein
  • 6chromatin remodeller
Date released
  • 179August, 2017
  • 90December, 2017
  • 76February, 2023
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 10October, 2017
  • 9November, 2017
  • 8November, 2018
  • 7January, 2019
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2June, 2018
Available data
  • 584fastq
  • 479bam
  • 416bigWig
  • 266bed narrowPeak
  • 125bigBed narrowPeak
  • 98tsv
  • 51bed bed3+
  • 30bed broadPeak
  • 27tagAlign
  • 21bigBed broadPeak
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
Organism
  • 595Homo sapiens
Biosample type
  • cell line
  • 284primary cell
  • 175tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 257pancreas
  • 181epithelium
  • 77liver
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 491AMP
  • 111HPAP
Genome assembly (visualization)
  • 419hg19
  • 412GRCh38
  • 5hg18
Lab
  • 491AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

602 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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