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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
5
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
26
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
1
June, 2019
Available data
289
bam
266
bigWig
154
tsv
114
bed narrowPeak
83
fastq
70
tagAlign
50
bigBed narrowPeak
7
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
362
Homo sapiens
Biosample type
cell line
361
tissue
1
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
epithelium
390
liver
327
heart
286
brain
193
kidney
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
362
AMP
Genome assembly (visualization)
269
hg19
239
GRCh38
Lab
322
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
cell line
lab.title!
Katalin Susztak, Upenn
organ_slims!
epithelium
urinary bladder
BIOSAMPLE
ASSAY
362 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
primary cell
hepatic stellate cell
1
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