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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
28
ChIP-seq
8
total RNA-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
53
DNA accessibility
28
DNA binding
10
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
43
February, 2023
26
October, 2019
8
February, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
70
bed narrowPeak
44
bam
29
bigWig
25
bigBed narrowPeak
6
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
91
Homo sapiens
Biosample type
89
tissue
cell line
2
primary cell
Organ
847
pancreas
683
connective tissue
490
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
270
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
72
GRCh38
41
hg19
Lab
91
AMP-T2D consortium
biosample_type!
cell line
lab.title!
Mark McCarthy, Oxford
month_released!
October, 2017
BIOSAMPLE
ASSAY
91 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
1
2
tibial artery
1
23
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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