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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
2
total RNA-seq
1
GRO-seq
Assay category
13
DNA binding
2
Transcription
Target of assay
6
histone
6
histone modification
5
narrow histone mark
4
control
3
transcription factor
1
broad histone mark
Date released
13
December, 2017
February, 2018
2
May, 2021
1
January, 2018
Available data
15
bam
14
fastq
11
bigWig
8
bed narrowPeak
3
bed bed3+
2
tsv
Organism
16
Homo sapiens
Biosample type
16
in vitro differentiated cells
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
18
ureter
16
embryo
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
1
hg18
Lab
16
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
lab.title!
Xin Sun, UCSD
month_released!
February, 2018
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
9
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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