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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
total RNA-seq
84
RNA microarray
13
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
498
Transcription
13
DNA accessibility
Date released
574
February, 2021
411
August, 2017
295
May, 2020
284
October, 2019
218
June, 2019
168
July, 2018
143
May, 2021
141
August, 2021
120
May, 2019
108
July, 2019
102
February, 2023
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
53
March, 2020
49
April, 2018
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
500
tsv
477
bam
468
bigWig
89
txt
9
bed narrowPeak
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
599
Homo sapiens
Biosample type
570
tissue
cell line
26
in vitro differentiated cells
3
primary cell
Organ
457
connective tissue
388
adipose tissue
150
bone element
12
brain
9
limb
8
kidney
8
skeleton
3
blood vessel
3
heart
3
vasculature
2
artery
2
liver
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
599
AMP
Genome assembly (visualization)
481
hg19
476
GRCh38
Lab
599
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
103
inconsistent ontology term
5
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
599 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
subcutaneous adipose tissue
3
+ See 37 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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