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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
40
ChIP-seq
35
DNase-seq
6
ATAC-seq
6
Hi-C
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
42
DNA accessibility
40
DNA binding
6
3D chromatin structure
2
DNA methylation
Target of assay
21
control
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
44
June, 2019
23
October, 2018
22
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
482
bam
463
bigWig
410
tsv
57
bed narrowPeak
55
bigBed narrowPeak
36
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
fastq
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
txt
Organism
503
Homo sapiens
Biosample type
487
tissue
16
primary cell
1
in vitro differentiated cells
Organ
666
pancreas
559
connective tissue
434
adipose tissue
416
epithelium
336
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
75
artery
70
musculature of body
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
504
AMP
Genome assembly (visualization)
469
hg19
461
GRCh38
Lab
504
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
biosample_type!
cell line
month_released!
August, 2017
BIOSAMPLE
ASSAY
504 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
RNA microarray
RRBS
WGBS
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
3
1
muscle of leg
7
13
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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