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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
72
total RNA-seq
67
ChIP-seq
50
ATAC-seq
37
DNase-seq
6
Hi-C
5
RRBS
3
single cell RNA-seq
2
pCHi-C
2
small RNA-seq
1
WGBS
1
snATAC-seq
Assay category
88
DNA accessibility
77
Transcription
67
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
13
control
1
RNA binding protein
1
transcription factor
Date released
150
February, 2021
45
June, 2019
43
February, 2023
26
August, 2017
26
October, 2019
13
July, 2019
12
May, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
1
May, 2021
Available data
159
bam
155
bigWig
130
bed narrowPeak
89
txt
73
tsv
72
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
330
Homo sapiens
Biosample type
313
tissue
cell line
17
primary cell
Organ
851
pancreas
683
connective tissue
490
adipose tissue
442
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
329
AMP
1
T1D
Genome assembly (visualization)
183
GRCh38
172
hg19
Lab
329
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
1
audit script error
biosample_type!
cell line
month_released!
August, 2018
BIOSAMPLE
ASSAY
330 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
pCHi-C
small RNA-seq
WGBS
snATAC-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
5
36
2
skeletal muscle tissue
1
22
1
4
1
1
1
tibial artery
1
23
1
2
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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