Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
29
DNA binding
6
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
12
histone
12
histone modification
11
control
7
broad histone mark
6
transcription factor
5
narrow histone mark
3
other context
3
other post-translational modification
Date released
December, 2017
13
February, 2018
9
November, 2018
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
39
bam
38
fastq
29
bigWig
20
bed narrowPeak
13
bigBed narrowPeak
7
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
41
Homo sapiens
Biosample type
25
tissue
16
in vitro differentiated cells
Organ
852
pancreas
679
connective tissue
490
adipose tissue
422
epithelium
323
liver
286
brain
235
heart
207
kidney
164
vasculature
159
bone element
158
blood vessel
122
limb
96
musculature of body
73
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
embryo
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
28
GRCh38
26
hg19
1
hg18
Lab
41
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
month_released!
August, 2021
December, 2017
BIOSAMPLE
ASSAY
41 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
20
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
9
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
Download