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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
DNase-seq
56
single cell RNA-seq
42
ChIP-seq
11
ATAC-seq
7
total RNA-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
small RNA-seq
Assay category
91
DNA accessibility
64
Transcription
42
DNA binding
4
DNA methylation
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
August, 2021
80
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
128
bam
118
bigWig
110
bed narrowPeak
102
bigBed narrowPeak
77
bed bed3+
77
bed broadPeak
77
bigBed broadPeak
18
tsv
5
csv
5
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
206
Homo sapiens
Biosample type
171
tissue
35
primary cell
cell line
Organ
852
pancreas
679
connective tissue
490
adipose tissue
441
epithelium
386
liver
286
brain
235
heart
207
kidney
vasculature
159
bone element
158
blood vessel
122
limb
96
musculature of body
73
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
47
KPMP
Genome assembly (visualization)
128
GRCh38
116
hg19
Lab
145
AMP-T2D consortium
47
KPMP
14
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
month_released!
August, 2021
organ_slims!
vasculature
BIOSAMPLE
ASSAY
206 results
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DNase-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
small RNA-seq
tissue
kidney
13
56
27
11
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
epithelial cell of proximal tubule
1
10
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 2 more…
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