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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
36
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Assay category
73
DNA binding
42
DNA accessibility
7
Transcription
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
July, 2019
6
August, 2021
4
June, 2019
February, 2020
3
March, 2020
Available data
99
bed narrowPeak
81
bam
65
bigWig
63
bigBed narrowPeak
8
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
124
Homo sapiens
Biosample type
123
tissue
cell line
1
primary cell
Organ
847
pancreas
664
connective tissue
477
adipose tissue
epithelium
379
liver
324
kidney
299
heart
256
brain
159
bone element
155
vasculature
150
blood vessel
114
limb
84
musculature of body
70
artery
59
eye
42
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
100
GRCh38
66
hg19
Lab
124
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
month_released!
February, 2020
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
tissue
coronary artery
5
35
2
tibial artery
23
1
2
aorta
13
4
1
1
1
ascending aorta
16
1
thoracic aorta
16
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primary cell
smooth muscle cell of the brain vasculature
1
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