Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
59
single cell RNA-seq
56
total RNA-seq
39
ChIP-seq
6
snATAC-seq
4
RRBS
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
116
Transcription
39
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
RNA binding protein
3
transcription factor
Date released
128
August, 2021
80
June, 2019
47
September, 2023
22
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
February, 2021
4
May, 2019
3
December, 2019
Available data
173
bed narrowPeak
126
bam
117
bigWig
101
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
57
txt
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
324
Homo sapiens
Biosample type
290
tissue
34
primary cell
cell line
Organ
840
pancreas
432
epithelium
385
liver
324
kidney
316
heart
283
brain
219
connective tissue
165
vasculature
160
blood vessel
116
limb
100
adipose tissue
96
musculature of body
74
artery
60
eye
43
nerve
29
embryo
22
spleen
22
vein
20
lung
18
ureter
9
bone element
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
47
KPMP
Genome assembly (visualization)
191
GRCh38
115
hg19
Lab
142
Katalin Susztak, Upenn
135
AMP-T2D consortium
47
KPMP
Audit category:
6
inconsistent ontology term
2
audit script error
biosample_type!
cell line
month_released!
February, 2021
target.investigated_as!
RNA binding protein
other context
BIOSAMPLE
ASSAY
324 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
59
49
26
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 7 more…
primary cell
epithelial cell of proximal tubule
1
1
9
1
kidney epithelial cell
1
1
4
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
See all biosamples
Download