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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
123
ChIP-seq
22
ATAC-seq
5
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
123
DNA binding
27
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
166
May, 2020
56
December, 2017
41
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
5
December, 2019
5
October, 2019
3
March, 2020
2
August, 2021
1
February, 2020
1
February, 2021
1
June, 2019
Available data
271
bam
246
bigWig
159
tsv
89
bed narrowPeak
86
fastq
56
bigBed narrowPeak
39
tagAlign
9
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
338
Homo sapiens
Biosample type
cell line
317
tissue
11
primary cell
10
in vitro differentiated cells
Organ
785
pancreas
connective tissue
479
adipose tissue
402
epithelium
339
liver
320
kidney
287
heart
169
brain
159
bone element
144
vasculature
139
blood vessel
107
limb
83
musculature of body
69
artery
58
eye
35
nerve
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
16
vein
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
338
AMP
Genome assembly (visualization)
251
hg19
227
GRCh38
Lab
298
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
biosample_type!
cell line
month_released!
March, 2019
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
338 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
103
20
2
3
1
1
1
1
1
right lobe of liver
3
8
1
2
1
2
primary cell
hepatocyte
5
2
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
10
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