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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
18
snATAC-seq
17
total RNA-seq
12
single cell RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
190
DNA binding
55
DNA accessibility
33
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
May, 2019
19
April, 2020
18
July, 2019
16
October, 2017
12
February, 2020
8
January, 2021
3
March, 2020
2
November, 2018
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
285
Homo sapiens
Biosample type
257
tissue
cell line
29
primary cell
Organ
852
pancreas
684
connective tissue
491
adipose tissue
440
epithelium
390
liver
330
kidney
306
heart
258
brain
159
bone element
120
vasculature
115
limb
114
blood vessel
89
musculature of body
70
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
259
AMP
19
LungMap
8
T1D
Genome assembly (visualization)
192
GRCh38
139
hg19
Lab
259
AMP-T2D consortium
19
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
month_released!
May, 2019
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
lung
10
9
1
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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