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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
4
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
May, 2021
1
January, 2018
Available data
27
fastq
26
bam
19
bigWig
14
bed narrowPeak
4
tsv
3
bed bed3+
Organism
27
Homo sapiens
Biosample type
27
in vitro differentiated cells
cell line
Organ
814
pancreas
682
connective tissue
491
adipose tissue
440
epithelium
390
liver
335
kidney
324
heart
286
brain
170
vasculature
164
blood vessel
158
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
27
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
month_released!
May, 2021
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
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