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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
31
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
160
DNA accessibility
119
Transcription
31
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
320
Homo sapiens
Biosample type
295
tissue
25
primary cell
cell line
Organ
851
pancreas
680
connective tissue
490
adipose tissue
412
epithelium
383
liver
320
kidney
319
heart
200
brain
159
bone element
123
vasculature
117
blood vessel
96
musculature of body
53
limb
49
artery
40
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
273
AMP
47
KPMP
Genome assembly (visualization)
183
GRCh38
107
hg19
Lab
142
Katalin Susztak, Upenn
131
AMP-T2D consortium
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
month_released!
October, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
320 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
kidney epithelial cell
1
1
5
1
epithelial cell of proximal tubule
1
1
3
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
+ See 3 more…
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